Containers

ReproNim/containers

We highly recommend (re)using the collection of Singularity containers prepared by the ReproNim project, and ideally using the datalad-container extension. See a typical YODA workflow for more information on how it should typically be used.

Besides using that collection via DataLad, you can use the images directly for the versions we have already prefetched (if any is missing, please let us know). That might be preferable over fetching your own copies of the containers, so that no more space is wasted on Discovery (some containers are large). For example, to validate your BIDS dataset using bids-validator, do:

cd path/to/my/bids/dataset
singularity run -B $PWD:$PWD /dartfs/rc/lab/D/DBIC/DBIC/archive/containers/images/bids/bids-validator--1.11.0.sing $PWD

NeuroDocker

TODO

ReproZip

TODO

ReproMan

TODO